All that is fine and dandy but if the animals in this film also end up having mammal dna to specifically change their behaviour and inteligence.... Your complaint will be moot.
Anyway, even in the unused JP4 script, the "tamed" raptors werent rolling around in the fields waiting for scientists to pet them.. they were violent animals that were constantly strategizing ways to escape their captivity. The director already said the raptors arent gonna be "dog-like pets" in this... just predators in search of prey.