SiL - maybe different races, but that doesn't make much sense. Humans have 99.9% DNA in common, but that 0.1% accounts for the differences. All the aliens in A2 looked the same. But the alien in A1 and the ridge heads both come from humans, and are from the same group of eggs.
The theory, I believe, is that aliens change over time. They lose the covering over their ridge heads.
Bear in mind - it could be due to a different race of aliens, like you said. The A1 and A2 aliens both had a spike sticking out their backs. The A3 didn't (as it was born from an ox/dog), neither did the A4 - as they were bred out of genetic experiments from Ripley. The AVP aliens - well we don't know where the predators found them.
Just a way of explaining things I know it is not canon but it at least fits the established continuity within the films although the new AVP2 designs will debunk it.