Considering what happened in the recent comics, I'm not sure Fox is really taking more than a cursory interested in how it might fit together... They start out with a whole lot of people escaping Hadley's Hope, which completely flies in the face of Hudson's comment about all the PDTs being holed up at the atmosphere processor.
If that many were missing, the Marines would have been more on guard, realising the obvious. As it was, Hicks presumes they're alive with a, "Looks like a God damned town meeting," while Gorman smiles and clearly thinks, like the rest of them, that they can go off and basically round everyone up to rescue them. And, of course, we find out they're just reading the PDTs in almost nothing but cadavers.
Between that and no explanation given for how Amanda's discoveries effectively contradict what Burke said about her, I get the impression that Fox is being more or less hands-off, logic-wise and assuming creative types probably know what they're doing.