It's not official yes but it's one way the Prometheus Special Edition pleasantly surprised me patching multiple things. Making the inclusion of Peter Weyland and the Last Engineer more worthwhile. Generally fleshing out Holloway, Shaw, Vickers, Janek, Millburn, Fifield, and ultimately making them "Getting Lost" more believable and creating more internal consistency within the affects of "The Pathogen" overall. Making Prometheus more like Covenant perhaps.
Considering the Covenant's MUTHUR at landing audibly tells them the planet's safe, the trusting of it and all implied from, following on, the inclusion of weapons makes sense in case of anything hostile human or otherwise, so ultimately I've got to agree to disagree.